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visitnoSeqs/Sample PD_whole_tree Ave.PD_whole_tree Err. chao1 Ave.chao1 Err. observed_species Ave.observed_species Err.
1200.0 4.761 0.040 48.022 0.578 30.545 0.338
1360.0 5.447 0.044 58.229 0.682 38.764 0.435
1520.0 5.889 0.047 65.411 0.764 44.459 0.501
1680.0 6.221 0.049 70.739 0.827 48.918 0.553
1840.0 6.492 0.051 75.469 0.883 52.615 0.596
11000.0 6.715 0.052 79.398 0.952 55.792 0.633
2200.0 4.815 0.047 49.349 0.720 31.013 0.402
2360.0 5.512 0.052 60.097 0.848 39.423 0.519
2520.0 5.975 0.056 67.786 0.954 45.347 0.602
2680.0 6.318 0.059 73.564 1.034 49.937 0.667
2840.0 6.601 0.061 78.151 1.106 53.791 0.720
21000.0 6.833 0.063 81.704 1.179 57.053 0.766
3200.0 5.274 0.304 58.661 4.340 35.930 2.773
3360.0 6.114 0.316 70.527 5.323 45.691 3.394
3520.0 6.677 0.318 78.110 5.810 52.952 3.843
3680.0 7.056 0.320 86.156 6.752 58.404 4.159
3840.0 7.368 0.333 90.845 6.949 62.948 4.489
31000.0 7.625 0.336 93.949 7.826 66.826 4.770
HMPbodysubsiteSeqs/Sample PD_whole_tree Ave.PD_whole_tree Err. chao1 Ave.chao1 Err. observed_species Ave.observed_species Err.
Anterior_nares200.0 3.451 0.074 32.764 1.092 19.462 0.524
Anterior_nares360.0 4.107 0.088 43.632 1.432 25.160 0.714
Anterior_nares520.0 4.565 0.097 51.133 1.639 29.455 0.852
Anterior_nares680.0 4.909 0.104 56.601 1.788 32.983 0.967
Anterior_nares840.0 5.210 0.110 61.323 1.978 36.135 1.064
Anterior_nares1000.0 5.459 0.114 64.874 2.259 38.853 1.147
Attached_Keratinized_gingiva200.0 3.442 0.058 27.022 0.699 18.789 0.433
Attached_Keratinized_gingiva360.0 3.841 0.063 32.896 0.829 23.048 0.537
Attached_Keratinized_gingiva520.0 4.109 0.067 37.022 0.948 25.963 0.615
Attached_Keratinized_gingiva680.0 4.309 0.069 40.332 1.041 28.290 0.667
Attached_Keratinized_gingiva840.0 4.476 0.071 43.281 1.138 30.272 0.715
Attached_Keratinized_gingiva1000.0 4.614 0.073 45.469 1.307 31.987 0.754
Buccal_mucosa200.0 4.604 0.062 47.529 1.009 28.690 0.557
Buccal_mucosa360.0 5.334 0.071 59.117 1.180 37.294 0.723
Buccal_mucosa520.0 5.794 0.076 67.018 1.363 43.446 0.838
Buccal_mucosa680.0 6.137 0.081 72.018 1.465 48.241 0.932
Buccal_mucosa840.0 6.425 0.085 76.430 1.572 52.232 1.007
Buccal_mucosa1000.0 6.659 0.089 80.572 1.784 55.638 1.074
Hard_palate200.0 5.533 0.053 53.266 0.884 34.045 0.470
Hard_palate360.0 6.282 0.060 62.894 1.027 42.963 0.602
Hard_palate520.0 6.770 0.064 70.725 1.170 49.335 0.704
Hard_palate680.0 7.133 0.068 76.143 1.282 54.104 0.782
Hard_palate840.0 7.406 0.071 80.860 1.442 58.010 0.852
Hard_palate1000.0 7.642 0.074 84.734 1.606 61.364 0.909
Left_Antecubital_fossa200.0 5.710 0.209 74.613 4.438 38.663 1.958
Left_Antecubital_fossa360.0 6.872 0.251 88.823 5.494 51.987 2.667
Left_Antecubital_fossa520.0 7.627 0.282 100.254 6.311 61.957 3.260
Left_Antecubital_fossa680.0 8.198 0.308 107.713 7.054 69.633 3.736
Left_Antecubital_fossa840.0 8.632 0.328 113.612 7.425 75.890 4.130
Left_Antecubital_fossa1000.0 8.980 0.347 117.325 7.726 81.130 4.506
Left_Retroauricular_crease200.0 2.586 0.080 23.905 1.284 12.885 0.550
Left_Retroauricular_crease360.0 3.149 0.096 32.120 1.561 17.199 0.750
Left_Retroauricular_crease520.0 3.564 0.107 39.079 1.907 20.624 0.909
Left_Retroauricular_crease680.0 3.897 0.115 44.249 2.090 23.537 1.037
Left_Retroauricular_crease840.0 4.175 0.122 48.403 2.296 26.049 1.145
Left_Retroauricular_crease1000.0 4.413 0.128 52.107 2.562 28.324 1.239
Mid_vagina200.0 2.042 0.101 12.300 0.974 7.899 0.467
Mid_vagina360.0 2.466 0.118 17.824 1.473 10.541 0.642
Mid_vagina520.0 2.724 0.130 21.036 1.616 12.472 0.772
Mid_vagina680.0 2.952 0.137 24.040 1.928 14.118 0.890
Mid_vagina840.0 3.142 0.144 26.516 2.082 15.550 0.987
Mid_vagina1000.0 3.307 0.149 27.770 2.205 16.881 1.090
Palatine_Tonsils200.0 6.209 0.058 57.092 0.910 38.355 0.505
Palatine_Tonsils360.0 6.955 0.067 68.115 1.077 47.632 0.653
Palatine_Tonsils520.0 7.442 0.073 74.933 1.196 54.060 0.757
Palatine_Tonsils680.0 7.791 0.078 80.841 1.294 58.894 0.842
Palatine_Tonsils840.0 8.059 0.081 85.630 1.436 62.907 0.909
Palatine_Tonsils1000.0 8.282 0.085 89.495 1.595 66.308 0.973
Posterior_fornix200.0 1.444 0.077 7.213 0.479 5.362 0.316
Posterior_fornix360.0 1.702 0.086 9.631 0.616 6.828 0.385
Posterior_fornix520.0 1.855 0.093 11.321 0.729 7.808 0.435
Posterior_fornix680.0 2.007 0.098 12.703 0.785 8.667 0.475
Posterior_fornix840.0 2.144 0.103 14.034 0.889 9.480 0.513
Posterior_fornix1000.0 2.264 0.108 15.020 0.969 10.181 0.550
Right_Antecubital_fossa200.0 5.435 0.191 69.213 4.035 35.440 1.660
Right_Antecubital_fossa360.0 6.522 0.224 84.877 4.779 47.913 2.302
Right_Antecubital_fossa520.0 7.232 0.247 93.533 5.554 56.693 2.750
Right_Antecubital_fossa680.0 7.758 0.266 100.949 5.940 63.633 3.120
Right_Antecubital_fossa840.0 8.181 0.283 107.622 6.396 69.418 3.453
Right_Antecubital_fossa1000.0 8.523 0.297 112.954 6.818 74.388 3.745
Right_Retroauricular_crease200.0 2.587 0.077 22.435 1.147 12.866 0.504
Right_Retroauricular_crease360.0 3.124 0.092 30.547 1.511 17.029 0.682
Right_Retroauricular_crease520.0 3.517 0.103 36.147 1.758 20.237 0.817
Right_Retroauricular_crease680.0 3.811 0.111 40.012 1.889 22.768 0.925
Right_Retroauricular_crease840.0 4.066 0.118 44.181 2.117 25.090 1.027
Right_Retroauricular_crease1000.0 4.285 0.123 46.995 2.255 27.141 1.111
Saliva200.0 6.963 0.056 77.949 1.108 48.980 0.562
Saliva360.0 7.925 0.067 92.595 1.297 62.626 0.759
Saliva520.0 8.542 0.075 102.385 1.468 71.898 0.904
Saliva680.0 8.967 0.081 109.622 1.628 78.942 1.016
Saliva840.0 9.331 0.086 116.214 1.804 84.760 1.110
Saliva1000.0 9.614 0.090 120.362 1.996 89.535 1.189
Stool200.0 5.183 0.075 83.647 1.882 45.998 0.885
Stool360.0 6.145 0.093 104.357 2.275 61.123 1.222
Stool520.0 6.809 0.105 120.269 2.649 72.281 1.472
Stool680.0 7.317 0.114 132.857 2.934 81.308 1.678
Stool840.0 7.744 0.121 143.146 3.144 88.945 1.842
Stool1000.0 8.112 0.128 152.476 3.492 95.740 1.997
Subgingival_plaque200.0 6.754 0.071 72.472 1.089 48.872 0.648
Subgingival_plaque360.0 7.571 0.082 84.736 1.281 61.287 0.858
Subgingival_plaque520.0 8.050 0.087 91.762 1.330 69.220 0.987
Subgingival_plaque680.0 8.403 0.091 97.364 1.413 75.134 1.088
Subgingival_plaque840.0 8.671 0.094 101.809 1.504 79.798 1.158
Subgingival_plaque1000.0 8.888 0.096 105.388 1.603 83.610 1.216
Supragingival_plaque200.0 5.707 0.074 62.225 1.146 43.333 0.692
Supragingival_plaque360.0 6.362 0.084 72.204 1.262 53.437 0.900
Supragingival_plaque520.0 6.766 0.090 78.944 1.396 59.876 1.021
Supragingival_plaque680.0 7.071 0.095 84.363 1.512 64.887 1.120
Supragingival_plaque840.0 7.324 0.099 87.688 1.593 68.780 1.195
Supragingival_plaque1000.0 7.515 0.101 90.884 1.727 72.010 1.256
Throat200.0 6.098 0.055 55.064 0.926 37.404 0.494
Throat360.0 6.857 0.064 65.256 1.041 46.271 0.638
Throat520.0 7.350 0.068 74.133 1.246 52.399 0.741
Throat680.0 7.705 0.074 79.428 1.347 57.078 0.830
Throat840.0 7.996 0.078 84.246 1.471 60.955 0.900
Throat1000.0 8.240 0.081 88.657 1.683 64.317 0.963
Tongue_dorsum200.0 5.465 0.043 41.765 0.613 30.090 0.343
Tongue_dorsum360.0 6.046 0.049 49.098 0.705 36.281 0.428
Tongue_dorsum520.0 6.395 0.051 54.195 0.806 40.318 0.481
Tongue_dorsum680.0 6.646 0.054 58.521 0.933 43.447 0.530
Tongue_dorsum840.0 6.846 0.055 61.824 1.038 46.075 0.569
Tongue_dorsum1000.0 7.004 0.057 64.509 1.207 48.237 0.607
Vaginal_introitus200.0 2.635 0.115 17.521 0.999 11.002 0.607
Vaginal_introitus360.0 3.081 0.125 23.523 1.318 14.253 0.752
Vaginal_introitus520.0 3.387 0.134 28.224 1.594 16.654 0.855
Vaginal_introitus680.0 3.626 0.140 31.452 1.785 18.675 0.947
Vaginal_introitus840.0 3.843 0.146 35.314 2.038 20.590 1.034
Vaginal_introitus1000.0 4.002 0.150 37.494 2.289 22.154 1.103
sexSeqs/Sample PD_whole_tree Ave.PD_whole_tree Err. chao1 Ave.chao1 Err. observed_species Ave.observed_species Err.
female200.0 4.449 0.047 44.066 0.691 28.032 0.401
female360.0 5.103 0.053 53.838 0.826 35.568 0.516
female520.0 5.524 0.057 60.704 0.924 40.841 0.596
female680.0 5.844 0.060 65.743 1.001 44.957 0.659
female840.0 6.108 0.062 70.393 1.065 48.412 0.710
female1000.0 6.324 0.064 74.180 1.145 51.360 0.754
male200.0 5.071 0.037 52.493 0.577 33.084 0.326
male360.0 5.795 0.042 63.500 0.672 42.042 0.421
male520.0 6.272 0.045 71.342 0.757 48.286 0.487
male680.0 6.622 0.047 77.287 0.820 53.145 0.538
male840.0 6.909 0.048 81.975 0.882 57.176 0.581
male1000.0 7.146 0.050 85.727 0.947 60.619 0.617